ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR399
source: miRBase, original name: sbi-MIR399h (MI0001849)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAATTGCCCTG miRNA* GTGCGGTTCTCCTCTGGCATG mismatches: 2 bulges: 0 |
pre-miRNA
AGTGTTCAGGGTAAGAATCACAGTGCGGTTCTCCTCTGGCATGGAGGCCAACATAGCAGGCATTGGAGAATGCACAGCGCTATCGCCATCCCTGCCAAAG
GAGAATTGCCCTGCCATTCGGTATAACCCTGG
dot-bracket secondary structure
......((((((..((((..(((.(((((((((((.(((((.((((((....(((((..(((((....))))).....))))).))).))).))))).))
))))))))).)))..))))......)))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
AGTGTTCAGGGTAAGAATCACAGTGCGGTTCTCCTCTGGCATGGAGGCCAACATAGCAGGCATTGGAGAATGCACAGCGCTATCGCCATCCCTGCCAAAG
GAGAATTGCCCTGCCATTCGGTATAACCCTGG
dot-bracket secondary structure
......((((((..((((..(((.(((((((((((.(((((.((((((....(((((..(((((....))))).....))))).))).))).))))).))
))))))))).)))..))))......)))))).
SIMILARITIES| miRBase zma-MIR399a: 0.0000000004 PMRD sbi-miR399h: 6e-71 microPC miR399: 0.00003 | UniProt no hits RFAM mir-399: 2e-58 |
Identical with: sbi-miR399h from PMRD (MNEST054496) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
