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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042599
species: Sorghum bicolor
miRNA family: MIR399
source: miRBase, original name: sbi-MIR399k (MI0013258)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCAAAGGGGATTTGCCCGG

miRNA*
GGGCAACCCTCCATTGGCAGG

mismatches: 5
bulges: 0

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pre-miRNA
AGGGCAACCCTCCATTGGCAGGTGCGACCTACACCCTACCCTGCCAAAGGGGATTTGCCCGGC

dot-bracket secondary structure
.((((((..((((.((((((((((.(........).)).)))))))).))))..))))))...


SIMILARITIES
miRBase zma-MIR399g: 0.0000000002

PMRD vvi-miR399e: 0.0007

microPC no hits
UniProt no hits

RFAM mir-399: 1e-24

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"




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