ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR437
source: miRBase, original name: sbi-MIR437c (MI0010904)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAGTTAGAGAAGTTTGACTT miRNA* GTCAAACTTCTTTTAAATTTTGA mismatches: 2 bulges: 2 |
pre-miRNA
GTCAAACTTCTTTTAAATTTTGATAATCAATATCTAACAATTTATATAGGTTGACAACAAACGATTGACATCAATAGATTTATTATGAAACCATTTTTTT
ATAATATACGATTCTTTTCATTAAGATGATATATTTTCATAAATATTGTGAATCAAAGTTAGAGAAGTTTGACTT
dot-bracket secondary structure
(((((((((((((..(((((((((...((((((....((((((....))))))...............((((........((((((((((......))))
))))))...((......)).....))))..............))))))...))))))))))))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Zhang L, Ware D, Unpublished (2009).,
GTCAAACTTCTTTTAAATTTTGATAATCAATATCTAACAATTTATATAGGTTGACAACAAACGATTGACATCAATAGATTTATTATGAAACCATTTTTTT
ATAATATACGATTCTTTTCATTAAGATGATATATTTTCATAAATATTGTGAATCAAAGTTAGAGAAGTTTGACTT
dot-bracket secondary structure
(((((((((((((..(((((((((...((((((....((((((....))))))...............((((........((((((((((......))))
))))))...((......)).....))))..............))))))...))))))))))))))))))))))..
SIMILARITIES| miRBase ssp-MIR437a: 0.000002 PMRD sof-miR437: 0.000002 microPC miR437: 0.000002 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Zhang L, Ware D, Unpublished (2009).,
