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Species belonging to selected taxon:

Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042617
species: Sorghum bicolor
miRNA family: MIR437
source: miRBase, original name: sbi-MIR437r (MI0010918)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AAAGTTAGAGAAGTTTGACTT

miRNA*
GTAAAACTTCTCTTATTTTGA

mismatches: 3
bulges: 0

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pre-miRNA
AGTAAAACTTCTCTTATTTTGACCAAGTCTATAGAAAAATGTACTAATATTTACAACATCAAATTAGTTTTATTCAATTCACCATGCAATGTGTTGGAGA
GTGAACTTATTTGGTATTACAGTATAGGTGCCAATGTATATTTCTATAAACTTGGCCAAAGTTAGAGAAGTTTGACTTAG


dot-bracket secondary structure
(((.((((((((((.((((((.((((((.((((((((.(((((((.(((((...((.(((((((.(((((.((((..((((.(((.....))).))))))
))))))).))))))).))..))))).)))))......)).)))))))).)))))).)))))).)))))))))).)))...



SIMILARITIES
miRBase sbi-MIR437g: 0.0000000000002

PMRD sbi-miR437r: 2e-99

microPC miR437: 0.0000001
UniProt no hits

RFAM no hits

Identical with: sbi-miR437r from PMRD (MNEST054514)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"




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