ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR159
source: miRBase, original name: zma-MIR159c (MI0001811)
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGATTGAAGGGAGCTCCT miRNA* GAGCTCCCTTCGATCCAATCC mismatches: 2 bulges: 0 |
pre-miRNA
ATGATTAAGAAAGGCGATCGAAGAGCTCCCTTCGATCCAATCCAGGAGGGGAAGTGGTCGGTTGCAGCTGCCGGTTCATGGATACCTCTCTGGTGCAGCA
ATGGCCGCTGCTCACCTCTGCACTTGCATGGGTGTGCATGACCCGGGAGATGAGCCCGCCATCATCTTTCCCTCGTGCTTGGATTGAAGGGAGCTCCTCT
CTGTCTGTCTGTCTGTC
dot-bracket secondary structure
..(((..(((.(((((...((.((((((((((((((((((..((.(((((((((((((.((((.((.((.((((.(((((.((((((....(((((((..
.((((....)).))...))))))).....)))))).))))).)))).)).)))))).))))....))))))))).)).)))))))))))))))))).)).
.))))).))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
ATGATTAAGAAAGGCGATCGAAGAGCTCCCTTCGATCCAATCCAGGAGGGGAAGTGGTCGGTTGCAGCTGCCGGTTCATGGATACCTCTCTGGTGCAGCA
ATGGCCGCTGCTCACCTCTGCACTTGCATGGGTGTGCATGACCCGGGAGATGAGCCCGCCATCATCTTTCCCTCGTGCTTGGATTGAAGGGAGCTCCTCT
CTGTCTGTCTGTCTGTC
dot-bracket secondary structure
..(((..(((.(((((...((.((((((((((((((((((..((.(((((((((((((.((((.((.((.((((.(((((.((((((....(((((((..
.((((....)).))...))))))).....)))))).))))).)))).)).)))))).))))....))))))))).)).)))))))))))))))))).)).
.))))).))))))....
SIMILARITIES| miRBase sbi-MIR159b: 7e-81 PMRD zma-miR159c: 2e-121 microPC miR319: 7e-75 | UniProt no hits RFAM MIR159: 5e-110 |
Identical with: zma-miR319m from PMRD (MNEST055054) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
