ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR159
source: miRBase, original name: zma-MIR159d (MI0001812)
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGATTGAAGGGAGCTCCT miRNA* GAGCTCCCTTCGATCCAATCC mismatches: 2 bulges: 0 |
pre-miRNA
AAGAAGATGCCGATCGATCGAAGAGCTCCCTTCGATCCAATCCAGGAGGGAAAGTGGTCGGCTGCAGCTGCCGGTTCATGGATACCTCTCTGGTGCAGCA
ATGGCCGAGATGCTCACCTGCACTTGCATGGGTGTGCATGACCCGGGAGACGAACCGACCATCATCTTTCCCTCGTGCTTGGATTGAAGGGAGCTCCTCT
CTCTCTCTCTCTCTTAT
dot-bracket secondary structure
(((((((....((..((..((.((((((((((((((((((..((.((((((((((((((((...(..((.((((.(((((.((((((....(((((((..
..(((......)))...))))))).....)))))).))))).)))).))..)..)))))))....))))))))).)).)))))))))))))))))).)).
.))..))))).))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
AAGAAGATGCCGATCGATCGAAGAGCTCCCTTCGATCCAATCCAGGAGGGAAAGTGGTCGGCTGCAGCTGCCGGTTCATGGATACCTCTCTGGTGCAGCA
ATGGCCGAGATGCTCACCTGCACTTGCATGGGTGTGCATGACCCGGGAGACGAACCGACCATCATCTTTCCCTCGTGCTTGGATTGAAGGGAGCTCCTCT
CTCTCTCTCTCTCTTAT
dot-bracket secondary structure
(((((((....((..((..((.((((((((((((((((((..((.((((((((((((((((...(..((.((((.(((((.((((((....(((((((..
..(((......)))...))))))).....)))))).))))).)))).))..)..)))))))....))))))))).)).)))))))))))))))))).)).
.))..))))).))))..
SIMILARITIES| miRBase sof-MIR159c: 3e-74 PMRD zma-miR159d: 6e-109 microPC miR319: 3e-71 | UniProt no hits RFAM MIR159: 2e-72 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
