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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042730
species: Zea mays
miRNA family: MIR166
source: miRBase, original name: zma-MIR166n (MI0013197)

Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCAATCCCT

miRNA*
 GGATTGTTGTCTGGCTCGGTG

mismatches: 6
bulges: 0
View larger
pre-miRNA
 GGGATTGTTGTCTGGCTCGGTGTCTCCGGTCGAGAYGGCCTTGCCGGCGCCGGAGCTGTCGTCGACCGGAGATCTCGGACCAGGCTTCAATCCCTT

dot-bracket secondary structure
(((((((..((((((..((..((((((((((((((.(((....(((....))).))).)).))))))))))))..))..))))))..)))))))..


SIMILARITIES
miRBase sbi-MIR166g: 3e-21

PMRD sbi-miR166g: 3e-21

microPC miR166: 0.0000002		UniProt no hits

RFAM mir-166: 1e-47

MORE

miRNEST target predictions: none
non-miRNEST targets: none
additional data
download this record
evidence: Solexa

references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"



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