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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042733
species: Zea mays
miRNA family: MIR167
source: miRBase, original name: zma-MIR167c (MI0001478)

Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTA

miRNA*
 GATCATGCTGTGGCAGCCTCACT

mismatches: 1
bulges: 2
View larger
pre-miRNA
 TGCCCAAGGGAACGAGTGAAGCTGCCAGCATGATCTAGCTCGGAGTGATCACGCGAGGAGAACAATAGCTCGAGGTGGTCATGCCTTGCTAGATCATGCT
GTGGCAGCCTCACTTCTTCCCGTCCTTGGGCA

dot-bracket secondary structure
.(((((((((((.((((((.(((((((((((((((((((..((.((((((((.((((...........))))..)))))))).))..)))))))))))).
.))))))).)))))).)))))....)))))).


SIMILARITIES
miRBase zma-MIR167d: 6e-43

PMRD zma-miR167c: 6e-71

microPC miR167: 0.000002		UniProt no hits

RFAM MIR167_1: 4e-63

Identical with: zma-miR167q from PMRD (MNEST054994)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references
[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"



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