ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR167
source: miRBase, original name: zma-MIR167e (MI0001819)
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GATCATGCTGTGCAGTTTCATC mismatches: 0 bulges: 1 |
pre-miRNA
TTGGTGTGTCCTCTAGTAGCTGAAGCTGCCAGCATGATCTGAGGTGTCCACAGCATATATATGGAAGCAGCTAGCGATCAGATCATGCTGTGCAGTTTCA
TCTGCTCGTGGACGCACAC
dot-bracket secondary structure
...((((((((.(.(((((.((((((((((((((((((((((....((((...........)))).((.....))..))))))))))))).)))))))))
.))))).).))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
TTGGTGTGTCCTCTAGTAGCTGAAGCTGCCAGCATGATCTGAGGTGTCCACAGCATATATATGGAAGCAGCTAGCGATCAGATCATGCTGTGCAGTTTCA
TCTGCTCGTGGACGCACAC
dot-bracket secondary structure
...((((((((.(.(((((.((((((((((((((((((((((....((((...........)))).((.....))..))))))))))))).)))))))))
.))))).).))))))))..
SIMILARITIES| miRBase sbi-MIR167d: 4e-16 PMRD zma-miR167e: 3e-63 microPC miR167: 0.000001 | UniProt no hits RFAM MIR167_1: 0.0000000000001 |
Identical with: zma-miR167m from PMRD (MNEST054990) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
