ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR169
source: miRBase, original name: zma-MIR169m (MI0013200)
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGAATGGCTTGCCTA miRNA* GCATCCATTCTTGGCTAAG mismatches: 2 bulges: 1 |
pre-miRNA
TTAGCCAAGAATGGCTTGCCTATCTCCATTATTTTGTTCATCGCAGGAAGCCCTTCCGTGATGGATGAAATGTGGATGATGGCATCCATTCTTGGCTAAG
T
dot-bracket secondary structure
((((((((((((((..((((.((((((((.((((..((((((((.((((....))))))))))))..))))))))).))))))).)))))))))))))).
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
TTAGCCAAGAATGGCTTGCCTATCTCCATTATTTTGTTCATCGCAGGAAGCCCTTCCGTGATGGATGAAATGTGGATGATGGCATCCATTCTTGGCTAAG
T
dot-bracket secondary structure
((((((((((((((..((((.((((((((.((((..((((((((.((((....))))))))))))..))))))))).))))))).)))))))))))))).
.
SIMILARITIES| miRBase sbi-MIR169q: 1e-25 PMRD osa-miR1430: 0.000000000001 microPC miR1430: 0.000000000001 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
