ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR169
source: miRBase, original name: zma-MIR169o (MI0013202)
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGAATGACTTGCCTA miRNA* ATGCAATGTGGCTGCATCGGCAGGTCTTCTTGGCTAGC mismatches: 1 bulges: 1 |
pre-miRNA
GTAGCCAAGAATGACTTGCCTATGCACGCCCTCTGTTGGCAGTTCCGTCCGGCAGCCATGGCGACGGTTGCACAAGGTGAGTTTTTGCGGCGTGGATGAT
GCAATGTGGCTGCATCGGCAGGTCTTCTTGGCTAGCCA
dot-bracket secondary structure
.((((((((((.((((((((.((.((((((((((.(((((((..(((((.(.((....)).)))))))))).))).).))).......)))))).))(((
(((.......))))))))))))))))))))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
GTAGCCAAGAATGACTTGCCTATGCACGCCCTCTGTTGGCAGTTCCGTCCGGCAGCCATGGCGACGGTTGCACAAGGTGAGTTTTTGCGGCGTGGATGAT
GCAATGTGGCTGCATCGGCAGGTCTTCTTGGCTAGCCA
dot-bracket secondary structure
.((((((((((.((((((((.((.((((((((((.(((((((..(((((.(.((....)).)))))))))).))).).))).......)))))).))(((
(((.......))))))))))))))))))))))))....
SIMILARITIES| miRBase sbi-MIR169i: 6e-28 PMRD sbi-miR169i: 6e-28 microPC no hits | UniProt no hits RFAM MIR169_5: 2e-68 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
