ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR169
source: miRBase, original name: zma-MIR169r (MI0013205)
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGG miRNA* GGCAAGTTGTCCTTGGCTACA mismatches: 3 bulges: 0 |
pre-miRNA
GCAGCCAAGGATGACTTGCCGGGTATTTTGAGCATGCATGTTACAGGGGAGCATATGCAATCTGTTTGGAATTTTGAGCCCATACCGTGCGGTGCCTGTC
TTCCGGCAAGTTGTCCTTGGCTACAT
dot-bracket secondary structure
(.(((((((((..((((((((((......(.(((((((((.((...(((..((..(.(((.....))).)....))..))).)).))))).)))))....
.))))))))))..))))))))).)..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
GCAGCCAAGGATGACTTGCCGGGTATTTTGAGCATGCATGTTACAGGGGAGCATATGCAATCTGTTTGGAATTTTGAGCCCATACCGTGCGGTGCCTGTC
TTCCGGCAAGTTGTCCTTGGCTACAT
dot-bracket secondary structure
(.(((((((((..((((((((((......(.(((((((((.((...(((..((..(.(((.....))).)....))..))).)).))))).)))))....
.))))))))))..))))))))).)..
SIMILARITIES| miRBase vvi-MIR169c: 0.0000004 PMRD vvi-miR169c: 0.0000004 microPC miR169: 0.00002 | UniProt no hits RFAM MIR169_2: 0.000007 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
