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Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST004280
species: Oryza sativa
miRNA family: miR162
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGGCGCAGTGGTTTATCGATC

miRNA*
 TCGATAAGCCTCTGCATCCAG

mismatches: 2
bulges: 0
View larger
pre-miRNA
 AGATTTGTTTGGGTGATGCCTGGGCGCAGTGGTTTATCGATCTCTTCCCTGCCTTGTGCTGCTCCGATCGATGCCCGTGCTGATTCTTGATAATATACAA
CGCAGGAATCGATCGATAAGCCTCTGCATCCAGATCTCACTTTTTGTTTAT

dot-bracket secondary structure
..........((((((...(((((.((((.((((((((((((..((((.(((.(((((....((.((((...((....)).))))...)).....)))))
.)))))))..)))))))))))).)))).)))))...)))))).........


SIMILARITIES
miRBase osa-MIR162b: 4e-72

PMRD osa-miR162b: 4e-72

microPC miR162: 4e-60		UniProt no hits

RFAM MIR162_2: 1e-60		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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