ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR395
source: miRBase, original name: zma-MIR395l (MI0013220)
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGAAGTGTTTGGAGGAACTC miRNA* GTTCCTTCCAAACACTTCACCA mismatches: 1 bulges: 1 |
pre-miRNA
AGTTCCTTCCAAACACTTCACCAGCTAGGCCATGCACAAGATGAACCCACATTAGGCTAGTGAAGTGTTTGGAGGAACTCT
dot-bracket secondary structure
(((((((.(((((((((((((.((((..((...))....((((......)))).)))).))))))))))))))))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
AGTTCCTTCCAAACACTTCACCAGCTAGGCCATGCACAAGATGAACCCACATTAGGCTAGTGAAGTGTTTGGAGGAACTCT
dot-bracket secondary structure
(((((((.(((((((((((((.((((..((...))....((((......)))).)))).))))))))))))))))))))..
SIMILARITIES| miRBase zma-MIR395c: 0.0000002 PMRD zma-miR395c: 0.0000002 microPC miR395: 0.001 | UniProt no hits RFAM mir-395: 0.00000000002 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
