miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Cynodon dactylon
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST042809
species:
Zea mays
miRNA family:
MIR396
source:
miRBase, original name:
zma-MIR396c
(
MI0010569
)
Taxonomy by NCBI:
Zea mays
Zea
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCCACAGGCTTTCTTGAACTG
miRNA*
GGTGGTGGTGGTATGTCGGATGG
mismatches:
10
bulges:
1
View larger
pre-miRNA
CGGGCATGCT
TTCCACAGGCTTTCTTGAACTG
TGAACTCGTG
GGTGGTGGTGGTATGTCGGATGG
AATGCTTGG
dot-bracket secondary structure
(((((((.((
.((((((.(((.((.....(..
((....))..
).....)).))).))).))).))
.))))))).
SIMILARITIES
miRBase
zma-MIR396d
:
2e-19
PMRD
zma-miR396n
:
3e-31
microPC
miR396
:
0.00000000006
UniProt
no hits
RFAM
MIR396: 2e-17
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
references
[
1
] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D,
PLoS Genet. 5:e1000716(2009).
,
"A genome-wide characterization of microRNA genes in maize"
[
2
] Xue LJ, Zhang JJ, Xue HW,
Nucleic Acids Res. 37:916-930(2009).
,
"Characterization and expression profiles of miRNAs in rice seeds"