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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST004282
species: Oryza sativa
miRNA family: miR162
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGGCGCAGTGGTTTATCGATC

miRNA*
 TCGATAAACCTCTGCATCCAG

mismatches: 2
bulges: 0
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pre-miRNA
 TGGTGATGCCTGGGCGCAGTGGTTTATCGATCCCTTCCCTGCCTTGTGGCGCTGATCCAGGAGCGGCGAATTTCTTTGAGAGGGTGTTCTTTTTTTTTCT
TCTTTTTGGTCCTTGTTGCAGCCAACGACAACGCGGGAATCGATCGATAAACCTCTGCATCCAGTTCTCGCC

dot-bracket secondary structure
.(((((...(((((.((((.((((((((((((..(((((.((.(((((((.(((...)))..(((((((...((...(((((((.............)))
))))...))...))))))).)))....)))).)))))))..)))))))))))).)))).)))))...)))))


SIMILARITIES
miRBase osa-MIR162a: 1e-75

PMRD osa-miR162a: 1e-75

microPC miR162: 0.0000000000006		UniProt no hits

RFAM MIR162_2: 1e-66		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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