ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: miR162
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGGCGCAGTGGTTTATCGATC miRNA* TCGATAAACCTCTGCATCCAG mismatches: 2 bulges: 0 |
pre-miRNA
TGGTGATGCCTGGGCGCAGTGGTTTATCGATCCCTTCCCTGCCTTGTGGCGCTGATCCAGGAGCGGCGAATTTCTTTGAGAGGGTGTTCTTTTTTTTTCT
TCTTTTTGGTCCTTGTTGCAGCCAACGACAACGCGGGAATCGATCGATAAACCTCTGCATCCAGTTCTCGCC
dot-bracket secondary structure
.(((((...(((((.((((.((((((((((((..(((((.((.(((((((.(((...)))..(((((((...((...(((((((.............)))
))))...))...))))))).)))....)))).)))))))..)))))))))))).)))).)))))...)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGGTGATGCCTGGGCGCAGTGGTTTATCGATCCCTTCCCTGCCTTGTGGCGCTGATCCAGGAGCGGCGAATTTCTTTGAGAGGGTGTTCTTTTTTTTTCT
TCTTTTTGGTCCTTGTTGCAGCCAACGACAACGCGGGAATCGATCGATAAACCTCTGCATCCAGTTCTCGCC
dot-bracket secondary structure
.(((((...(((((.((((.((((((((((((..(((((.((.(((((((.(((...)))..(((((((...((...(((((((.............)))
))))...))...))))))).)))....)))).)))))))..)))))))))))).)))).)))))...)))))
SIMILARITIES| miRBase osa-MIR162a: 1e-75 PMRD osa-miR162a: 1e-75 microPC miR162: 0.0000000000006 | UniProt no hits RFAM MIR162_2: 1e-66 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
