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Species belonging to selected taxon:

Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Paullinia cupana var. sorbilis, Citrus clementina



ABOUT THIS RECORD

ID: MNEST000431
species: Citrus sinensis
miRNA family: MIR396
source: miRNEST

Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCCACAGCTTTCTTGAACTT

miRNA*
 GTTCAAGAAATCTGTGGGAAG

mismatches: 1
bulges: 0
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pre-miRNA
 ATGCAAGTTCCTGTCATGTTTTTCCACAGCTTTCTTGAACTTCTTTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCCTCTAATAATAGGCTACGATTTGATGTGGCTAGCTGCAGCTATTAGAAGTTCAAGAAATCTGTGGGAAGAAATGGCAAATAAGGACT

dot-bracket secondary structure
.....(((((.((((((.(((((((((((.((((((((((((((((.((...................................................
............)).))..(((((((......)))))))(((....)))...)))))))))))))).))))))))))).)))))).....)))))


SIMILARITIES
miRBase csi-MIR396c: 4e-39

PMRD osa-miR396c: 0.00001

microPC miR396: 5e-32		UniProt no hits

RFAM MIR396: 0.0002		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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