miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST004386
species: Oryza sativa
miRNA family: MIR2123
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAAAAAGTCAACGGTGTCAAA

miRNA*
 TGACACCGTTGACTTCTTATA

mismatches: 1
bulges: 0
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pre-miRNA
 TTAATTACTCTCTCCATTTCAAAATGTTTGACACCGTTGACTTCTTATAACAAGTTTGACCGTTTATCTTATTAAAAAAATTTATGAAATATGTAANACT
ATATATGTACATAAAAGTATATTTAACCATAAATCAAATAATATGAAAAAAAAATAATTACATAGATTTTTGGAATAAGACGAATGGTCAAACACGTCCT
AAAAAGTCAACGGTGTCAAATATTTTAAAACGGAGGGAGTACTACATAA

dot-bracket secondary structure
.....((((((((((.(((.(((((((((((((((((((((((.(((..((..((((((((((((.(((((((..(((((((((((...((((((.....
.......)))))).((.(((.(((...((((..........))))....))).))).)).)))))))))))..))))))).))))))))))))..))..)
)).))))))))))))))))))))))).))).))))))))))........


SIMILARITIES
miRBase osa-MIR806c: 1e-36

PMRD osa-miR806c: 1e-36

microPC miR806: 0.0000002		UniProt no hits

RFAM MIR806: 1e-46		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
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