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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST004400
species:
Oryza sativa
miRNA family:
MIR1884
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTGACGCCGTTGACTTTTTT
miRNA*
AAAAGTCAACGATGTCAAACA
mismatches:
1
bulges:
0
View larger
pre-miRNA
TACTACCTTCATTCTAAAATG
TTTGACGCCGTTGACTTTTTT
CAAAAATATTTGATCGTTCGTCTTATTTAAAAAATTTAAGTAATTGTTAATTTTTTTT
CTATCATTTGATTTATTGTTAAATATACTTTTATGTATACATATAGTTTTACACATATCACAAAAGTTTTTGAATAAAACGAACAAACATGTTTAA
AAAA
GTCAACGATGTCAAACA
TTTAGGGAATGAGGAAAT
dot-bracket secondary structure
......(((((((((.(((((
(((((((.(((((((((((((
.((..((.(((....((((((.(((((((((((.((((((((....(((((.......
..(((....))).....)))))...))))).(((((.((..........)).))))).....))).))))))))))).))))))))).)).)).))
))))
))))))).)))))))))
)))..)))))))))....
SIMILARITIES
miRBase
osa-MIR806h
:
5e-39
PMRD
oru-miR806
:
8e-47
microPC
miR806
:
1e-24
UniProt
no hits
RFAM
MIR806: 5e-107
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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