miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST004402
species:
Oryza sativa
miRNA family:
MIR1884
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTGACGCCGTTGACTTTTTT
miRNA*
AAAAGTCAACGGCGTCAAACA
mismatches:
0
bulges:
0
View larger
pre-miRNA
TGCTTCCTCGTACTCCCTCCATCCCTAAATA
TTTGACGCCGTTGACTTTTTT
AAATATGTTTGAGCGTTCGTCTTGTTCAAAAACTTTTATGAAATGTGT
AAAACTATATAGACATAAAAGTATAGTTAACAGTAAATCAAATGATAGGAAAAGAATTAATAATTACTTAAATTTTTTGAATAAAACAAACGGTCAAATT
TTTTTAAA
AAAAGTCAACGGCGTCAAACA
TTTTGGGATGGAGGGAGTATTAGATATG
dot-bracket secondary structure
......((.((((((((((((((((.((((.
(((((((((((((((((((((
.((...((((((.((((.((.(((((((((((((((((((...(((((
(....))))))..))))))))).(((((........(((....)))........)))))..((((.....)))))))))))))).)).)))).)))))).
...)).))
))))))))))))))))))).)
))).)))))))))))))))).)).....
SIMILARITIES
miRBase
osa-MIR806h
:
2e-41
PMRD
oru-miR806
:
4e-49
microPC
miR806
:
5e-30
UniProt
no hits
RFAM
MIR806: 9e-109
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record