miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Actinidia chinensis
,
Actinidia deliciosa
,
Actinidia eriantha
,
Antirrhinum majus
,
Arachis duranensis
,
Arachis hypogaea
,
Arachis ipaensis
,
Barnadesia spinosa
,
Beta vulgaris
,
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Cichorium intybus
,
Citrus aurantium
,
Citrus reticulata
,
Citrus sinensis
,
Citrus unshiu
,
Coffea canephora
,
Cucumis melo subsp. melo
,
Eucalyptus globulus
,
Eucalyptus gunnii
,
Euonymus alatus
,
Euphorbia esula
,
Fagus sylvatica
,
Fragaria vesca
,
Fragaria x ananassa
,
Fraxinus excelsior
,
Gerbera hybrid cultivar
,
Glycine soja
,
Glycyrrhiza uralensis
,
Gossypium arboreum
,
Gossypium hirsutum
,
Gossypium raimondii
,
Guizotia abyssinica
,
Helianthus argophyllus
,
Helianthus ciliaris
,
Helianthus exilis
,
Helianthus paradoxus
,
Helianthus petiolaris
,
Helianthus tuberosus
,
Hevea brasiliensis
,
Humulus lupulus
,
Ipomoea batatas
,
Jatropha curcas
,
Juglans hindsii x Juglans regia
,
Lactuca perennis
,
Lactuca saligna
,
Lactuca sativa
,
Lactuca serriola
,
Lactuca virosa
,
Limnanthes alba
,
Linum usitatissimum
,
Lotus japonicus
,
Manihot esculenta
,
Medicago sativa
,
Mesembryanthemum crystallinum
,
Mimulus guttatus
,
Mimulus guttatus var. nasutus
,
Mimulus lewisii
,
Nicotiana benthamiana
,
Nicotiana langsdorffii x Nicotiana sanderae
,
Nicotiana tabacum
,
Ocimum basilicum
,
Panax ginseng
,
Parthenium argentatum
,
Paullinia cupana var. sorbilis
,
Petunia axillaris subsp. axillaris
,
Phaseolus acutifolius
,
Phaseolus coccineus
,
Pisum sativum
,
Populus deltoides
,
Populus euphratica
,
Populus nigra
,
Populus tremula
,
Populus tremula x Populus alba
,
Populus tremula x Populus tremuloides
,
Populus tremuloides
,
Populus trichocarpa x Populus nigra
,
Populus x canadensis
,
Prunus armeniaca
,
Prunus persica
,
Quercus petraea
,
Quercus robur
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Salvia miltiorrhiza
,
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Striga hermonthica
,
Tamarix hispida
,
Taraxacum kok-saghyz
,
Taraxacum officinale
,
Thellungiella halophila
,
Theobroma cacao
,
Trifolium pratense
,
Triphysaria pusilla
,
Triphysaria versicolor
,
Tropaeolum majus
,
Vitis shuttleworthii
,
Zinnia violacea
,
Bruguiera gymnorhiza
,
Cajanus cajan
,
Carica papaya
,
Capsicum annuum
,
Carthamus tinctorius
,
Catharanthus roseus
,
Centaurea maculosa
,
Centaurea solstitialis
,
Cicer arietinum
,
Cichorium endivia
,
Artemisia annua
,
Citrus clementina
,
Helianthus annuus
,
Glycine max
,
Arabidopsis thaliana
,
Solanum tuberosum
,
Vigna unguiculata
,
Vitis vinifera
,
Medicago truncatula
,
Brassica oleracea
,
Populus trichocarpa
,
Phaseolus vulgaris
,
Ricinus communis
,
Ipomoea nil
,
Populus trichocarpa x Populus deltoides
ABOUT THIS RECORD
ID:
MNEST000441
species:
Citrus sinensis
miRNA family:
MIRf37
source:
miRNEST
Taxonomy by NCBI:
Citrus sinensis
Citrus
Rutaceae
Sapindales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GATCGGTTCGGTTCGGTTCGG
miRNA*
GAATAAGAACCGAACTCAATAA
mismatches:
5
bulges:
1
View larger
pre-miRNA
ATTTTATGAAAAGAACC
GAATAAGAACCGAACTCAATAA
GAACCGAACTCAAACGGTTCTTTTCG
GATCGGTTCGGTTCGGTTCGG
TTTTTTCAGTTCTG
dot-bracket secondary structure
......((((((.((((
((((..((((((((((....((
((((((........))))))))....
....)))))))))).))))))
))))))))......
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record