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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST004426
species: Oryza sativa
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCC

miRNA*
 GGAATGTTGTCTGGCTCGAGG

mismatches: 3
bulges: 0
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pre-miRNA
 TCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCC
CCTCAAGTAA

dot-bracket secondary structure
....(((((((((((((..((((((.(((((((.((.........(((((...(((((....)))))..)))))..))))))))).))))))..))))))
)))))))...


SIMILARITIES
miRBase osa-MIR166d: 6e-58

PMRD osa-miR166d: 6e-58

microPC miR166: 6e-49		UniProt no hits

RFAM mir-166: 2e-52		most similar mature miRNAs

Identical with: miR166 from microPC (MNEST046452)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence




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