miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST004426
species: Oryza sativa
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCC

miRNA*
 GGAATGTTGTCTGGCTCGAGG

mismatches: 3
bulges: 0
View larger
pre-miRNA
 TCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCC
CCTCAAGTAA

dot-bracket secondary structure
....(((((((((((((..((((((.(((((((.((.........(((((...(((((....)))))..)))))..))))))))).))))))..))))))
)))))))...


SIMILARITIES
miRBase osa-MIR166d: 6e-58

PMRD osa-miR166d: 6e-58

microPC miR166: 6e-49		UniProt no hits

RFAM mir-166: 2e-52		most similar mature miRNAs

Identical with: miR166 from microPC (MNEST046452)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence




Liczniki na strone;