miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Actinidia chinensis, Actinidia deliciosa, Actinidia eriantha, Antirrhinum majus, Barnadesia spinosa, Cichorium intybus, Coffea canephora, Fraxinus excelsior, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Ipomoea batatas, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Panax ginseng, Parthenium argentatum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Taraxacum kok-saghyz, Taraxacum officinale, Triphysaria pusilla, Triphysaria versicolor, Zinnia violacea, Capsicum annuum, Carthamus tinctorius, Catharanthus roseus, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST044791
species: Lactuca sativa
miRNA family: MIR172
source: microPC, original name: miR172

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGAATCTTGATGATGCTGCA

miRNA*
 CGGCATCTTCAAGATTCACA

mismatches: 3
bulges: 0
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pre-miRNA
 TGCGGCATCTTCAAGATTCACATGCCAATATTCAACTCTAGATAAGTTTTTGGTTAATGGGTAATGAGAATCTTGATGATGCTGCA

dot-bracket secondary structure
.((((((((.(((((((((.((((((..((((.((((..(((....)))..))))))))))).))).))))))))).)))))))).


SIMILARITIES
miRBase ath-MIR172a: 0.000001

PMRD ath-miRf11033-akr: 0.000001

microPC miR172: 1e-43		UniProt no hits

RFAM mir-172: 0.00002

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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