ABOUT THIS RECORDspecies: Cichorium intybus
miRNA family: MIR167
source: microPC, original name: miR167
Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GGTCATCCTTGCAGCTTCA mismatches: 3 bulges: 0 |
pre-miRNA
TGAAGCTGCCAGCATGATCTGGTGATGCCAAACTGGGTGGCCTGTGTATGTTTGTCCATATATGAGTGGATAATGTAAAAGTTCTATATATAGTCAAATG
TCTTTGTGTGTGTTTTTGGTGATGTGTTGGTATCTGTTCATGGGTAGAGTAAGGAGAGGTTAACCAGGTCATCCTTGCAGCTTCA
dot-bracket secondary structure
.((((((((.((.((((((((((...(((...((.....(((((((.....((((((((......))))))))......((.((.((((((..(((((..
.(.......)....)))))..)))))).))...))...)))))))......))....)))..)))))))))).)).)))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGAAGCTGCCAGCATGATCTGGTGATGCCAAACTGGGTGGCCTGTGTATGTTTGTCCATATATGAGTGGATAATGTAAAAGTTCTATATATAGTCAAATG
TCTTTGTGTGTGTTTTTGGTGATGTGTTGGTATCTGTTCATGGGTAGAGTAAGGAGAGGTTAACCAGGTCATCCTTGCAGCTTCA
dot-bracket secondary structure
.((((((((.((.((((((((((...(((...((.....(((((((.....((((((((......))))))))......((.((.((((((..(((((..
.(.......)....)))))..)))))).))...))...)))))))......))....)))..)))))))))).)).)))))))).
SIMILARITIES| miRBase vvi-MIR167a: 0.0000006 PMRD vvi-miR167a: 0.0000006 microPC miR167: 2e-102 | UniProt no hits RFAM MIR167_1: 0.00001 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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