miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis



ABOUT THIS RECORD

ID: MNEST044859
species: Raphanus raphanistrum subsp. maritimus
source: microPC, original name: miR171

Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATTGAGCCGCGTCAATATCT

miRNA*
 ATATTGGCCTGGTTCATTCAGA

mismatches: 3
bulges: 0
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pre-miRNA
 GATATTGGCCTGGTTCATTCAGATCTTCCCGACCAAACCACGCAACAACTCTCTTAGATATCTGATTGAGCCGCGTCAATATCT

dot-bracket secondary structure
(((((((((.(((((((.((((((..((............................)).)))))).))))))).))))))))).


SIMILARITIES
miRBase bna-MIR171g: 0.00000002

PMRD bna-miR171g: 0.00000002

microPC miR171: 6e-42		UniProt no hits

RFAM MIR171_1: 0.000004

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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