ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: MIR172
source: microPC, original name: miR172
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAATCTTGATGATGCTGCAT miRNA* GCGTCACCATCAAGATTCAC mismatches: 2 bulges: 0 |
pre-miRNA
ATGCGTCACCATCAAGATTCACAAAACTATGAAGGCTTCATCGGGACGGTGAGTGTACGGCCGGCGGCGGTGGCTCTTCTTACTTAAAAGGTTTCCTTTT
TCGTATGAGAATCTTGATGATGCTGCAT
dot-bracket secondary structure
(((((.((.(((((((((((..........((((((.((((((...))))))...(((.(((...))).))))).)))).(((..((((((...))))))
..)))...))))))))))).)).)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATGCGTCACCATCAAGATTCACAAAACTATGAAGGCTTCATCGGGACGGTGAGTGTACGGCCGGCGGCGGTGGCTCTTCTTACTTAAAAGGTTTCCTTTT
TCGTATGAGAATCTTGATGATGCTGCAT
dot-bracket secondary structure
(((((.((.(((((((((((..........((((((.((((((...))))))...(((.(((...))).))))).)))).(((..((((((...))))))
..)))...))))))))))).)).)))))
SIMILARITIES| miRBase aqc-MIR172a: 0.0000004 PMRD mes-miR172: 1e-68 microPC miR172: 2e-67 | UniProt no hits RFAM mir-172: 0.000007 |
Identical with: mes-miR172 from PMRD (MNEST048693) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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