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Species belonging to selected taxon:
Populus deltoides
,
Populus euphratica
,
Populus nigra
,
Populus tremula
,
Populus tremula x Populus alba
,
Populus tremula x Populus tremuloides
,
Populus tremuloides
,
Populus trichocarpa x Populus nigra
,
Populus x canadensis
,
Populus trichocarpa
,
Populus trichocarpa x Populus deltoides
ABOUT THIS RECORD
ID:
MNEST044876
species:
Populus tremula
source:
microPC, original name:
miR169
Taxonomy by NCBI:
Populus tremula
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGCCAAGGATGACTTGCCTG
miRNA*
GCAAGTGTCCTTGGCT
mismatches:
0
bulges:
2
View larger
pre-miRNA
AGCCAAGGATGACTTGCCTG
TAGCCTCCCTCGGATTCAAGAACACGAGCATTTATGCAGTGCTCAAAAGAAAAGGAGAGAATGATCCCAGCTTGCTGCGC
GCTACAAGGTCAATCCATGGAAGCAGCGAGAAGAAGGTGGTTTATAGCTAGAATCCTCATGAGGTTCACA
GCAAGTGTCCTTGGCT
dot-bracket secondary structure
((((((((((.((((((.((
(((((((....((((((.((.....(((((((.....)))))))..............((((.(((....((((((((..
.(((...((.....)).)))..)))))))).....))).))))....)).))))))....)))))).)))
))))))))))))))))
SIMILARITIES
miRBase
ptc-MIR169k
:
3e-64
PMRD
ptc-miR169k
:
3e-64
microPC
miR169
:
5e-103
UniProt
no hits
RFAM
MIR169_2: 6e-63
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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