ABOUT THIS RECORDspecies: Sorghum bicolor
source: microPC, original name: miR168
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGATCGGGA miRNA* CCGCCTTGCACCAAGTGA mismatches: 2 bulges: 0 |
pre-miRNA
TCGCTTGGTGCAGATCGGGACCTGCCGCCGTGCTCGGACGGGACAGATCCCGCCTTGCACCAAGTGA
dot-bracket secondary structure
(((((((((((((..(((((.(((((((((....))).)))..))).)))))..)))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TCGCTTGGTGCAGATCGGGACCTGCCGCCGTGCTCGGACGGGACAGATCCCGCCTTGCACCAAGTGA
dot-bracket secondary structure
(((((((((((((..(((((.(((((((((....))).)))..))).)))))..)))))))))))))
SIMILARITIES| miRBase sbi-MIR168: 2e-32 PMRD sbi-miR168: 2e-32 microPC miR168: 2e-32 | UniProt no hits RFAM MIR168: 3e-31 |
Identical with: sbi-miR168 from PMRD (MNEST054436) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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