miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST044883
species: Sorghum bicolor
source: microPC, original name: miR169

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAGCCAAGGATGACTTGCCT

miRNA*
 GCAGTCTCCTTGGCTA

mismatches: 0
bulges: 2
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pre-miRNA
 TAGCCAAGGATGACTTGCCTGTGTCCTTTGTGCCGAAGGATCAGAAATGTGAGCCTTTGAGATAGATGGTTCATAGGCAGTCTCCTTGGCTA

dot-bracket secondary structure
((((((((((.((((.(((((((.(((((((..((((((..((....))....))))))..))))).))..)))))))))))))))))))))


SIMILARITIES
miRBase sbi-MIR169l: 3e-47

PMRD sbi-miR169l: 3e-47

microPC miR169: 3e-47		UniProt no hits

RFAM MIR169_2: 5e-46

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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