ABOUT THIS RECORDspecies: Curcuma longa
miRNA family: MIR167
source: microPC, original name: miR167
Taxonomy by NCBI:
Curcuma longa Curcuma Zingiberaceae Zingiberales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTC miRNA* GATCATTATGGCAGTTTCA mismatches: 3 bulges: 0 |
pre-miRNA
TGAAGCTGCCAGCATGATCTCATGATATCCTTCTTTTCTTTTTCTTCTCAATCTCTCCTTTTGAATTTGTTTTCCGAAAAAAATAGATTAAAAATTCTGT
ATATGTAACTAGGTCTAAATGTGAAGGAATCGACGAGATCATTATGGCAGTTTCA
dot-bracket secondary structure
.((((((((((..((((((((.((((.((((((.....((((((....(((..((.......))..)))......)))))).(((((........)))))
......................))))))))))..))))))))..)))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGAAGCTGCCAGCATGATCTCATGATATCCTTCTTTTCTTTTTCTTCTCAATCTCTCCTTTTGAATTTGTTTTCCGAAAAAAATAGATTAAAAATTCTGT
ATATGTAACTAGGTCTAAATGTGAAGGAATCGACGAGATCATTATGGCAGTTTCA
dot-bracket secondary structure
.((((((((((..((((((((.((((.((((((.....((((((....(((..((.......))..)))......)))))).(((((........)))))
......................))))))))))..))))))))..)))))))))).
SIMILARITIES| miRBase osa-MIR167h: 0.00003 PMRD vvi-miR167c: 0.00003 microPC miR167: 4e-35 | UniProt no hits RFAM MIR167_1: 0.0006 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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