miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST044922
species: Pinus taeda
miRNA family: MIR166
source: microPC, original name: miR166

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCC

miRNA*
 GGAATGTTGTCTGGCTCGACT

mismatches: 4
bulges: 0
View larger
pre-miRNA
 GGGGAATGTTGTCTGGCTCGACTTCATCCGGATTTGGGCTCCAATGTTCGGATGCCGTCGGACCAGGCTTCATTCCCC

dot-bracket secondary structure
((((((((..((((((..((((..(((((((((((((...)))).)))))))))..))))..))))))..))))))))


SIMILARITIES
miRBase pta-MIR166a: 5e-39

PMRD pta-miR166a: 5e-39

microPC miR166: 8e-38		UniProt no hits

RFAM mir-166: 0.00002

Identical with: pta-MIR166a from miRBase (MNEST039420)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record




Liczniki na strone;