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Species belonging to selected taxon:

Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor



ABOUT THIS RECORD

ID: MNEST044950
species: Triphysaria pusilla
source: microPC, original name: miR171

Taxonomy by NCBI:
Triphysaria pusilla Triphysaria Rhinantheae Orobanchaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAGCCGTGCCAATATCA

miRNA*
 ATGTTGGAACGGCTCAAT

mismatches: 2
bulges: 0
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pre-miRNA
 TGATGTTGGAACGGCTCAATCAAATCAAATCTCCCAAGAATTGGGTCCTTTAGTTTGATTGAGCCGTGCCAATATCA

dot-bracket secondary structure
.((((((((.(((((((((((((((.(((...((((.....))))...))).))))))))))))))).)))))))).


SIMILARITIES
miRBase rco-MIR171e: 4e-21

PMRD vvi-miR171i: 2e-20

microPC miR171: 2e-38		UniProt no hits

RFAM MIR171_1: 8e-20

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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