ABOUT THIS RECORDspecies: Triphysaria pusilla
source: microPC, original name: miR171
Taxonomy by NCBI:
Triphysaria pusilla Triphysaria Rhinantheae Orobanchaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGCCGTGCCAATATCA miRNA* ATGTTGGAACGGCTCAAT mismatches: 2 bulges: 0 |
pre-miRNA
TGATGTTGGAACGGCTCAATCAAATCAAATCTCCCAAGAATTGGGTCCTTTAGTTTGATTGAGCCGTGCCAATATCA
dot-bracket secondary structure
.((((((((.(((((((((((((((.(((...((((.....))))...))).))))))))))))))).)))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGATGTTGGAACGGCTCAATCAAATCAAATCTCCCAAGAATTGGGTCCTTTAGTTTGATTGAGCCGTGCCAATATCA
dot-bracket secondary structure
.((((((((.(((((((((((((((.(((...((((.....))))...))).))))))))))))))).)))))))).
SIMILARITIES| miRBase rco-MIR171e: 4e-21 PMRD vvi-miR171i: 2e-20 microPC miR171: 2e-38 | UniProt no hits RFAM MIR171_1: 8e-20 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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