miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea

ABOUT THIS RECORD

ID: MNEST044963
species: Paullinia cupana var. sorbilis
source: microPC, original name: miR1448

Taxonomy by NCBI:
Paullinia cupana var. sorbilis Paullinia cupana Paullinia Sapindaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
CTTTCCAACACCTCTCATAC

miRNA*
ATGAGAGGACTGGACAGAG

mismatches: 3
bulges: 1

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pre-miRNA
GTATGAGAGGACTGGACAGAGCTGAGCTTGTAGCTTTTTCTTTTGAATTCTTTCCAACACCTCTCATAC

dot-bracket secondary structure
((((((((((..((((.(((...((((.....)))).(((....))).))).))))...))))))))))

SIMILARITIES

miRBase no hits

PMRD no hits

microPC no hits

UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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