miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Glycine soja, Phaseolus acutifolius, Phaseolus coccineus, Cajanus cajan, Glycine max, Vigna unguiculata, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST044964
species: Glycine max
miRNA family: MIR398
source: microPC, original name: miR398

Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTCTCAGGTCACCCCT

miRNA*
 GAGTGGATCTGAGAACACAAG

mismatches: 1
bulges: 1
View larger
pre-miRNA
 AGGAGTGGATCTGAGAACACAAGGCTGGTTTGCACTGCTATATTATGATCGATTGGTATAAGGTGAATTTACTTTGTGTTCTCAGGTCACCCCT

dot-bracket secondary structure
(((.(((.((((((((((((((((..((((..(.((..(((((((........))))))))))..))))..))))))))))))))))))).)))


SIMILARITIES
miRBase gma-MIR398b: 2e-48

PMRD gma-miR398b: 2e-48

microPC miR398: 2e-48		UniProt no hits

RFAM MIR398: 0.00002

Identical with: gma-MIR398b from miRBase (MNEST040479)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record




Liczniki na strone;