miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST044971
species: Pinus taeda
miRNA family: MIR319
source: microPC, original name: miR319

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGACTGAAGGGAGCTCC

miRNA*
 AGCTCCCTTCAATCCAAGA

mismatches: 1
bulges: 0
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pre-miRNA
 CGGAGCTCCCTTCAATCCAAGAAATGCGTGTTTAGTGACAGTACATCTCCTGCGTCATGCACACCACTATCCTGTCATGCAGGTCGATTGATTGATTTGTT
CAGGCTGCTGGAGAGTCACGGACAGGGAAGTAGAATGCATGAATCAGCAGCTGAACCACCGCTGCACAAGCTTTGGTTGGACTGAAGGGAGCTCC

dot-bracket secondary structure
)(((((((((((((.(((((..((.((.(((.(((((...((...((..((((.(((((((..(.(((.(((((((..(((((((((....))))))))).
..((((.......))))...))))))).))).)..)))))))....))))..))))...))))).))).)).))..))))).)))))))))))))


SIMILARITIES
miRBase pta-MIR319: 2.0E-108

PMRD pta-miR319: 2.0E-108

microPC miR319: 6.0E-72		UniProt no hits

RFAM 9MIR159: 0.0002

Identical with: pta-miR159a from PMRD (MNEST051553), pta-MIR319 from miRBase , pta-miR319 from PMRD , pta-MIR159a from miRBase

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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