ABOUT THIS RECORDspecies: Carthamus tinctorius
miRNA family: MIR396
source: microPC, original name: miR396
Taxonomy by NCBI:
Carthamus tinctorius Carthamus Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACT miRNA* TTCAACAAAGCTGTGGGA mismatches: 1 bulges: 0 |
pre-miRNA
TTCCACAGCTTTCTTGAACTGCATGGTTCAATGTTGATCTGTTGGATCTGTGTTGTTTTTTTGGCTTAAATCTTTGCAGTTCAACAAAGCTGTGGGA
dot-bracket secondary structure
((((((((((((.((((((((((.(((((((..(.((((.....)))).)..))).............))))..)))))))))).))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TTCCACAGCTTTCTTGAACTGCATGGTTCAATGTTGATCTGTTGGATCTGTGTTGTTTTTTTGGCTTAAATCTTTGCAGTTCAACAAAGCTGTGGGA
dot-bracket secondary structure
((((((((((((.((((((((((.(((((((..(.((((.....)))).)..))).............))))..)))))))))).))))))))))))
SIMILARITIES| miRBase aqc-MIR396a: 0.00000002 PMRD aqc-miR396a: 0.00000002 microPC miR396: 1e-37 | UniProt no hits RFAM MIR396: 0.000005 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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