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Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST045002
species: Manihot esculenta
source: microPC, original name: miR159

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTGGATTGAAGGGAGCTCT

miRNA*
 AGCTCCTTGAAGTCCAATAG

mismatches: 3
bulges: 0
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pre-miRNA
 GGAGCTCCTTGAAGTCCAATAGAGGATCTTGCTGGGTAGATTGAGCTGCTGAGCTATGGATCCCACAGCCCTATCTCATAATAAAGACTCTAGTCTTCTT
GGATAGGCTTGTGGCTTGCATATCTCAGGAGCTTCATTACCTCTTATGTTAGATCCTTGTTTGGATTGAAGGGAGCTCT

dot-bracket secondary structure
((((((((((..(((((((..((((((((.((.((((((...(((((.(((((.((((.(..((((((.((((((.((.....(((((....)))))..)
))))))).))))))..).)))).))))).)))))..)))))).....)).))))))))..)))))))..))))))))))


SIMILARITIES
miRBase rco-MIR159: 2e-47

PMRD vvi-miR159c: 1e-29

microPC miR159: 7e-99		UniProt no hits

RFAM MIR159: 3e-46

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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