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Species belonging to selected taxon:
Manihot esculenta
ABOUT THIS RECORD
ID:
MNEST045002
species:
Manihot esculenta
source:
microPC, original name:
miR159
Taxonomy by NCBI:
Manihot esculenta
Manihot
Manihoteae
Crotonoideae
Euphorbiaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCT
miRNA*
AGCTCCTTGAAGTCCAATAG
mismatches:
3
bulges:
0
View larger
pre-miRNA
GG
AGCTCCTTGAAGTCCAATAG
AGGATCTTGCTGGGTAGATTGAGCTGCTGAGCTATGGATCCCACAGCCCTATCTCATAATAAAGACTCTAGTCTTCTT
GGATAGGCTTGTGGCTTGCATATCTCAGGAGCTTCATTACCTCTTATGTTAGATCCTTG
TTTGGATTGAAGGGAGCTCT
dot-bracket secondary structure
((
((((((((..(((((((..(
(((((((.((.((((((...(((((.(((((.((((.(..((((((.((((((.((.....(((((....)))))..)
))))))).))))))..).)))).))))).)))))..)))))).....)).)))))))).
.)))))))..))))))))))
SIMILARITIES
miRBase
rco-MIR159
:
2e-47
PMRD
vvi-miR159c
:
1e-29
microPC
miR159
:
7e-99
UniProt
no hits
RFAM
MIR159: 3e-46
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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