ABOUT THIS RECORDspecies: Manihot esculenta
source: microPC, original name: miR399
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAATTGCCCT miRNA* TGCGATTCTCCTTTGGCAGG mismatches: 1 bulges: 0 |
pre-miRNA
AGTGCGATTCTCCTTTGGCAGGAATTTGGTATTCTGCTGTTAACCAGTCTGCTAAACTGATAGCTGCCAAAGGAGAATTGCCCT
dot-bracket secondary structure
((.((((((((((((((((((...(((((((..(((........)))..))))))).......)))))))))))))))))).))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGTGCGATTCTCCTTTGGCAGGAATTTGGTATTCTGCTGTTAACCAGTCTGCTAAACTGATAGCTGCCAAAGGAGAATTGCCCT
dot-bracket secondary structure
((.((((((((((((((((((...(((((((..(((........)))..))))))).......)))))))))))))))))).))
SIMILARITIES| miRBase sbi-MIR399h: 0.00006 PMRD vvi-miR399a: 0.00006 microPC miR399: 2e-42 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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