ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR166
source: microPC, original name: miR166
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGCTCGGGG mismatches: 4 bulges: 0 |
pre-miRNA
GGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCTAGCTTGATCTTTTTGATCTCTCAAATCGA
TCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCC
dot-bracket secondary structure
((((((((..((((((..(((((((((.....(((((((((((((((((((((((..(((((.((((.........((((.....)))).........))
))...))))))))))..))).)))))).))))).))))....)))).)))))..))))))..))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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deep sequencing data evidence
GGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCTAGCTTGATCTTTTTGATCTCTCAAATCGA
TCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCC
dot-bracket secondary structure
((((((((..((((((..(((((((((.....(((((((((((((((((((((((..(((((.((((.........((((.....)))).........))
))...))))))))))..))).)))))).))))).))))....)))).)))))..))))))..))))))))
SIMILARITIES| miRBase osa-MIR166b: 5e-38 PMRD osa-miR166b: 5e-38 microPC miR166: 5e-38 | UniProt no hits RFAM mir-166: 9e-37 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
deep sequencing data evidence
