miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus

ABOUT THIS RECORD

ID: MNEST045062
species: Carthamus tinctorius
source: microPC, original name: miR156

Taxonomy by NCBI:
Carthamus tinctorius Carthamus Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGACAGAAGAGAGTGAGCA

miRNA*
CTCACTTCTCTTGCTGTCA

mismatches: 1
bulges: 2

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pre-miRNA
TGACAGAAGAGAGTGAGCATATGCAAAGCAATTGTATAGAAAAACTATACATTTGTTGGAATTATGCGTGTGCTCACTTCTCTTGCTGTCA

dot-bracket secondary structure
.((((((((((((((((((((((((.(((((.(((((((.....))))))).))))).......))))))))))))).)))))).))))).

UniProt no hits

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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