miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis



ABOUT THIS RECORD

ID: MNEST045062
species: Carthamus tinctorius
source: microPC, original name: miR156

Taxonomy by NCBI:
Carthamus tinctorius Carthamus Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGTGAGCA

miRNA*
 CTCACTTCTCTTGCTGTCA

mismatches: 1
bulges: 2
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pre-miRNA
 TGACAGAAGAGAGTGAGCATATGCAAAGCAATTGTATAGAAAAACTATACATTTGTTGGAATTATGCGTGTGCTCACTTCTCTTGCTGTCA

dot-bracket secondary structure
.((((((((((((((((((((((((.(((((.(((((((.....))))))).))))).......))))))))))))).)))))).))))).


SIMILARITIES
miRBase osa-MIR156l: 0.00007

PMRD vvi-miR156d: 0.00007

microPC miR156: 1e-46		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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