miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST045103
species: Lactuca virosa
source: microPC, original name: miR171

Taxonomy by NCBI:
Lactuca virosa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGAGCCGTGCCAATATCA

miRNA*
 ATGTTGGAATGGCTCAATC

mismatches: 2
bulges: 0
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pre-miRNA
 TGATGTTGGAATGGCTCAATCAAATCAGATCTCCCCGGATGAATCAACAGGGTGTTTTAGTTTGATTGAGCCGTGCCAATATCA

dot-bracket secondary structure
.((((((((.(((((((((((((((.(((.(.(((.(..........).))).).))).))))))))))))))).)))))))).


SIMILARITIES
miRBase tcc-MIR171f: 0.00000000007

PMRD vvi-miR171i: 0.0000000003

microPC miR171: 2e-42		UniProt no hits

RFAM MIR171_1: 0.000000005

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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