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Species belonging to selected taxon:
Euphorbia esula
,
Hevea brasiliensis
,
Jatropha curcas
,
Linum usitatissimum
,
Manihot esculenta
,
Populus deltoides
,
Populus euphratica
,
Populus nigra
,
Populus tremula
,
Populus tremula x Populus alba
,
Populus tremula x Populus tremuloides
,
Populus tremuloides
,
Populus trichocarpa x Populus nigra
,
Populus x canadensis
,
Bruguiera gymnorhiza
,
Populus trichocarpa
,
Ricinus communis
,
Populus trichocarpa x Populus deltoides
ABOUT THIS RECORD
ID:
MNEST045115
species:
Populus nigra
source:
microPC, original name:
miR319
Taxonomy by NCBI:
Populus nigra
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTC
miRNA*
GCTCCTTGAAGTCCAATAG
mismatches:
3
bulges:
0
View larger
pre-miRNA
GA
GCTCCTTGAAGTCCAATAG
AAGCTCCTGCTGGGTAGATCGAGCTGCTGAGCTATGAATCCCACAGCCCTATCACCATCAGTCATTTTGATGGGCCTGC
GGCTTGCATATCTCAGGAGCTTTATTACCTAATGTTAGATCTTTT
TTTGGATTGAAGGGAGCTC
dot-bracket secondary structure
((
(((((((..(((((((.((
(((.((..(((((((((...(((((.(((((.((((....((.(((.(((((((.............))))))).))).
))....)))).))))).)))))..)))))))..))..)).)))))
.)))))))..)))))))))
SIMILARITIES
miRBase
ptc-MIR159b
:
2e-77
PMRD
ptc-miR159b
:
2e-77
microPC
miR159
:
2e-77
UniProt
no hits
RFAM
MIR159: 4e-76
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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