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Species belonging to selected taxon:
Cichorium intybus
,
Cichorium endivia
ABOUT THIS RECORD
ID:
MNEST045116
species:
Cichorium intybus
source:
microPC, original name:
miR166
Taxonomy by NCBI:
Cichorium intybus
Cichorium
Cichoriinae
Cichorieae
Cichorioideae
Asteraceae
Asterales
campanulids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCC
miRNA*
GGATGTTGTCTGGCTCCAGGCC
mismatches:
3
bulges:
2
View larger
pre-miRNA
GAG
GGATGTTGTCTGGCTCCAGGCC
ACTAGAGAACCTTATGGATCTCTCGATCTATGGATCTCTTTTCTCTCTATATATATTACATAATATATATGTATA
TCATCATAGTCAACGCATCTGATTTCATTGCCTTCGTTGACTAGAGATGGTGATAGATCATTCTTGATCTGGTGTCG
TCGGACCAGGCTTCATTCCC
dot-bracket secondary structure
..(
(((((..((((((.(((.(((.
((.(((((.((..(((((((....))))))))).)))))........((((((((((....))))))))))..((
(((((.(((((((((((..((....)).)))....))))))))..))))))).(((((((....)))))))..)).)
)))))))))))..)))))).
SIMILARITIES
miRBase
vvi-MIR166e
:
0.00000001
PMRD
vvi-miR166e
:
0.00000001
microPC
miR166
:
3e-49
UniProt
no hits
RFAM
mir-166: 0.0000002
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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