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Species belonging to selected taxon:
Populus deltoides
,
Populus euphratica
,
Populus nigra
,
Populus tremula
,
Populus tremula x Populus alba
,
Populus tremula x Populus tremuloides
,
Populus tremuloides
,
Populus trichocarpa x Populus nigra
,
Populus x canadensis
,
Populus trichocarpa
,
Populus trichocarpa x Populus deltoides
ABOUT THIS RECORD
ID:
MNEST045119
species:
Populus nigra
source:
microPC, original name:
miR168
Taxonomy by NCBI:
Populus nigra
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGCTTGGTGCAGGTCGGGA
miRNA*
CCGCCTTGCATCAACTGA
mismatches:
2
bulges:
0
View larger
pre-miRNA
TCGCTTGGTGCAGGTCGGGA
ACTGATTCGGCGATTTGATTGCCAGATGGCTCGACATGACTGGTTGTTGTGGAAAAAGAAAAGGAAGGAAATAGGAAAAA
AAAAACAAAGAATAGCGAATTGGATC
CCGCCTTGCATCAACTGA
dot-bracket secondary structure
(((.((((((((((.(((((
.(..(((((.(..((((...(((....)))....((..((.....))..)).............................
.....)))).....))))))..).))
))).)))))))))).)))
SIMILARITIES
miRBase
ptc-MIR168a
:
8e-55
PMRD
ptc-miR168a
:
8e-55
microPC
miR168
:
4e-60
UniProt
no hits
RFAM
MIR168: 2e-53
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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