ABOUT THIS RECORDspecies: Pinus taeda
source: microPC, original name: miR396
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAAC miRNA* TCAAGAAAACTGTGGGA mismatches: 1 bulges: 0 |
pre-miRNA
ATTCCACAGCTTTCTTGAACTTTACGTGTACGGGACGAGGAGATTCTGATTTCTACGTCTGCGATTAAAGTTCAAGAAAACTGTGGGA
dot-bracket secondary structure
)((((((((.((((((((((((((..(((...(((((.((((((....)))))).))))))))..)))))))))))))).))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATTCCACAGCTTTCTTGAACTTTACGTGTACGGGACGAGGAGATTCTGATTTCTACGTCTGCGATTAAAGTTCAAGAAAACTGTGGGA
dot-bracket secondary structure
)((((((((.((((((((((((((..(((...(((((.((((((....)))))).))))))))..)))))))))))))).))))))))
SIMILARITIES| miRBase pta-MIR396: 3.0E-44 PMRD pta-miR396: 3.0E-44 microPC miR396: 3.0E-44 | UniProt no hits RFAM 6MIR396: 1.0E-40 |
Identical with: pta-MIR396 from miRBase (MNEST039426), pta-miR396 from PMRD |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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